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Newsletter European
Fish Ageing Network (EFAN) 1997 - 2000 |
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European
Fish Ageing Network |
No.
4-2000; November 2000 |
Sponsored by: |
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Homepage: http://www.efan.no Newsletter Editor: E. Moksness |
Objectives European Fish Ageing Network (EFAN) aims to develop,
conduct and coordinate collaborative research and training, and thereby
ensure that age determination becomes a reliable element of the assessments
underlying the scientific management advice on fisheries and environmental
resources. |
European Commission Concerted
Action (FAIR PL.
96.1304) |
Contents
Page
1.
Editorial.............................................................................................. 2
2. The 5th
EFAN Plenary Meeting and Cell WSs 2000............................... 5
3. Cell 2
& 3 WS Report......................................................................... 8
4. Cell 4
WS Report.............................................................................. 17
5. Cell 5
WS Report.............................................................................. 18
6. The
EFAN Award 2000..................................................................... 18
7.
Exchange and Mobility Costs............................................................. 19
8. Some
general information................................................................... 19
9. List of
EFAN Reports........................................................................ 20
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EFAN Institute of Marine Research Flødevigen Marine Research Station N-4817 His, Norway |
Phone: +47 37 05 90 00 Fax: +47 37 05 90 01 Email:
bente.lundin@imr.no |
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1.
Editorial
I
am sitting here preparing the last issue of EFAN Newsletter and realize how
fast time flies. It is five years since
a group of people met in Ghent, Belgium and prepared the proposal for what
later became EFAN (European Fish Ageing Network) and by 31 November 2000 this
Concerted Action ends. The catalyst for EFAN was the initial meeting in
Ghent, Belgium in January 1996 to develop a proposal for a Thematic Network.
The proposed topics for discussion included;
1.
Standardising
current methodologies
2.
Libraries
of methods and reference collections
3.
The
need for validation of the precision and accuracy of age readings
4.
Training
and information
5.
New
methodologies and the enlargement of this scientific field
6.
The
establishment of regional/national collections of scales and otoliths
As the meeting progressed it became clear that the range
and depth of the topics being discussed were more appropriate to a Concerted
Action proposal than a Thematic Network.
The principal focus of this meeting was a
“brainstorming” session on the structure of the network. The participants then
split up into a number of small groups to develop proposals to progress the
issues rasied at the "Brainstorming" session. Each group presented its findings to a
plenary discussion where a pboposal for a network structure evolved that would
encompass all the emerging aims and provide a vehicle for the necessary
participant interaction in addition to the exchange and dissemination of
information.
This process later became known as the "Ghent
exercise" and produced an inter dependant structure similar to the cells
in a honeycomb that would enable the participants to progress the five proposed
key areas with the assistance of a small supporting administrative core.

Figure 1. The cell structure of EFAN
The participants at the Ghent meeting then divided into
the 5 groups to develop outline plans for the delivery of the Cell objectives,
through programmes of workshops and Cell meetings during the four year life of
the proposed Concerted Action. These groups also developed a series of
Milestones and Deliverables for the work of each Cell. Following the Ghent
meeting 25 fisheries institutes registered as participants in EFAN and 34
scientists indicated their interest in developing EFAN. The European Fish Ageing Network (EFAN) is a
European Commission Concerted Action Sponsored by the FAIR Programme (FAIR PL.
96.1304). The Objectives of EFAN are as follows:
EFAN aims to develop, conduct
and coordinate collaborative research and training, and thereby ensure that age
determination becomes a reliable element of the assessments underlying the
scientific management advice on fisheries and environmental resources.
The preliminary
partial objectives of EFAN are:
-
To test and improve the
accuracy of current and new ageing procedures by utilising a range of
verification procedures and adopting both classical and novel techniques (e.g.
radiometry, trace element analyses, advanced staining techniques).
-
To conduct practical
development of existing ageing methods with a view towards rationalising
current practices while satisfying the demands for speed, accuracy and
consistency.
-
To develop and update a
library of method descriptions and reference collections for different species
and stocks for use in training and intercalibration exercises.
-
To stimulate
international collaboration by offering services and facilities to workshops,
conferences, visiting scientists and students focussing on ageing research and
methods.
Over the four years, 99 scientist from Europe have
participated in the project, representing 35 different Universities and
Research Institutes from 16 Europeans countries. Have we achieved our principal objective to develop, conduct and
coordinate collaborative research and training, and thereby ensure that age
determination becomes a reliable element of the assessments underlying the
scientific management advice on fisheries and environmental resources? Ultimately all fish ageing research
contributes to stock assessments of one kind or another and EFAN may not have
achieved all that was desirable in terms of Quality Assurance, but the door has
been opened and there can be no going back on this issue.
Others
will evaluate EFAN, however my feeling is that we have been rather successful
over the four years. Most of the tasks
we set five years ago we have been able to achieve. In addition, we have produced the EFAN Reports, which was not
identified. This year nine EFAN Reports
have been published, of which three are only available at the EFAN Homepage (http://www.efan.no). Over the four years, 20 EFAN reports have been published, and all
are available also on the EFAN Homepage.
The EFAN Homepage has been operating since April 1997. The homepage
experienced an increasing interest over the four years, starting from around
6000 hits per month and increasing to around 15000 hits by September 2000 (Fig.
1). By October 2000, 6 databases are in
operation on the Homepage:
·
DB1 contains
information on the different institutes and persons involved in EFAN
·
DB2 contains
information on available software and hardware for examination of otoliths and
scales
·
DB3 contains
information on experts in age estimation techniques and species studied at
various institutions.
·
DB4 contains
information on reference collections and check collections for reader consistency
·
DB5 contain information
on otolith meetings and calibration references
·
DB6 Digital Image Reference DataBase
During the four years EFAN has acted as a driving wheel
for those scientist in Europe concerted with fish ageing. In addition to support for several EC funded
project and Workshops organised by ICES, the following projects should be
mentioned:
·
Support to the work by Paul Connolly (Irland) on the development of
"OTO educational and reference
CD-ROM for fish ageing"
·
Support to the text book on Sclerochronology (Editor: Herve Troadec,
France)
·
Supporting an European Atlas of otoliths

Figure
2. Number of hits per month on the EFAN
Homepage, from the start in April 1997 until October 2000.
Table 1. List of
Cell Co-ordinators.
|
EFAN Cell |
Cell name |
Cell Co-ordinator |
Country |
|
1 |
Methodologies and Procedures |
W. McCurdy |
Northern Ireland, UK |
|
2 |
Information Processing |
H. Troadec |
France |
|
3 |
Information, Exchange and Training |
J.
Modin |
Sweden |
|
4 |
Validation of ageing |
G. Eltink B. Morales-Nin |
Netherlands Spain |
|
5 |
Research and application of ageing methodology |
P. Wright |
Scotland, UK |
I
would like to take this opportunity to thank all of you who have participated
in EFAN and made EFAN what it has became.
,/span>A special thank goes to the cell coordinators: Willie McCurdy, Hervé Troadec,
Johan Modin, Guus Eltink, Beatriz
Morales-Nin and Peter Wright. Without their contribution, eager and positive attitude EFAN would
not have been what it became.
Thank
you all.
Erlend
Moksness
2.
The 5th
EFAN Plenary Meeting and Cell WSs 2000
The
last EFAN Pleanary session and WSs took place in Palma de Mallorca, Spain
between 2-6 October 2000. The local
host was CSIC/UIB-Institut
Mediterrani d´Estudis Avancats. The
work was focused on preparation of the final products from EFAN:
These
Guidelines are now available as EFAN Reports and represents work that took
place in all workshops. In addition,
Reports from three cell workshops are presented in this newsletter. In the followinmg is given a overview of the
meeting.
Agenda
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2 Oct |
3 Oct |
4 Oct |
5 Oct |
6 Oct |
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Cell 1 WS |
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Cell 3 WS |
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Cell 2&3 WS |
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Cell 4 WS |
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Cell 5 WS |
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EFAN Plenary |
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Cell 1: Monday 2 October - Wednesday 4 October
Workshop on “Guidelines for
QA and methodology”
Cell 3: Monday 2 October - Tuesday 3 October
Workshop on “Guidelines for
exchange programs and WS”
Cell 2
& 3: Wednesday 4 October -
Thursday 5 October
Workshop on “Guidelines for
reference collections”
Cell 4: Thursday 5 October
Workshop on “Guidelines for
validation”
Cell 5: Monday 2 October - Thursday 5 October
Workshop on “Conceptual
models”
Plenary
Meeting, Friday 6 October
Contributed session
0900 Jose Eduardo Rebelo "Relationship between
fish length and weight and the same
measurements in the correspondent otoliths in some estuarine fish species"
0930 Magnus Appelberg "Presentation of the work
on QA in Sweden"
1000 Toni Lombarte "A program to analyze shape otolith
image: The case of notothenoids fishes"
1100 Sarah C Swan
and John D. M. Gordon "Stock discrimination of black scabbardfish in the NE Atlantic using otolith
microchemistry"
1130 Peer Doering-Arjes "Report about the FAbOSA
Workshop"
1200 B.Morales-Nin
et al "Kronomorphos a software for shape and age analysis"
1230 A. Geffen
"Otolith microchemistry data, what does it tell us?"
1300 N. Raventos
"Planktonic larval duration and settlement marks on the otoliths of
Mediterranean fishes"
1500 - 1700 Reports from Cell Workshops
1700 Summing up
List of
participants
|
Participants |
|
Country |
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José Pedro |
Andrade |
Portugal |
|
Magnus |
Appelberg |
Sweden |
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Enrico |
Arneri |
Italy |
|
Richard |
Ayers |
UK |
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Paola |
Belcari |
Italy |
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Tor |
Birkeland |
Norway |
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Loes |
Bolle |
The Netherlands |
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Orestes |
Cendrero |
Spain |
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Manuela |
Cunha |
Portugal |
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Helene |
de Pontual |
France |
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Peer |
Doering-Arjes |
Germany |
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M.W. |
Easey |
UK |
|
Guus |
Eltink |
The Netherlands |
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Arild |
Folkvord |
Norway |
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Nuno |
Formigo |
Portugal |
|
Petter |
Fossum |
Norway |
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Maria Teresa |
Garcia Santamaria |
Spain |
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Audrey |
Geffen |
UK |
|
Gianfranco |
Giannetti |
Italy |
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John D.M. |
Gordon |
UK |
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Frank Ivan |
Hansen |
Denmark |
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Tore |
Jakobsen |
Norway |
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Kim |
Lilliestierna |
Norway |
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Toni |
Lombarte |
Spain |
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Paulino |
Lucio |
Spain |
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Bente |
Lundin |
Norway |
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Willie |
McCurdy |
N. Ireland, UK |
|
Johan |
Modin |
Sweden |
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Maria Cristina |
Morgado |
Portugal |
|
Erlend |
Moksness |
Norway |
|
Beatriz |
Morales-Nin |
Spain |
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Ana |
Moreira |
Portugal |
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Ana |
Moreno |
Portugal |
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Henrik |
Mosegaard |
Denmark |
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Andrew |
Newton |
UK |
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Conrad |
Nolan |
Ireland |
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Isabel |
Palomera |
Spain |
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Jacques |
Panfili |
France |
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Carmen |
Pineiro Alvarez |
Spain |
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Jari |
Raitaniemi |
Finland |
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Sandra |
Ramos |
Portugal |
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Nuria |
Raventos |
Spain |
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Jose Eduardo |
Rebeleo |
Portugal |
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Filipa |
Ribeiro |
Portugal |
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Sarah |
Swan |
UK |
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Paulo |
Talhadas dos Santos |
Portugal |
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Javier |
Tomas |
UK |
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Hervé |
Troadec |
France |
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Celia |
Vassilopoulou |
Greece |
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Dawn |
Woodruffe |
UK |
|
Peter John |
Wright |
Scotland, UK |
3. EFAN
Cell 2&3 Workshop Report
“Use of digital tools for
exchanging annotated images of calcified structures”
CONTENTS
I. Introduction 10
A. Background 10
B. Goals
for digital image users 10
II. Creation
of a digitised reference collection 11
A. Software
choice 11
B. Image
digitisation 11
1. Image
resolution and colour versus black &white......................................................... 11
Viewing limitations.............................................................................................................. 11
C. Image
annotation 12
1. Image format.............................................................................................................. 12
2. Use of
digital images for control collections:................................................................. 14
3. Use of agreed
digital collections for training................................................................. 15
4. Digital
validated collections......................................................................................... 15
5. Use of
digital images for exchanges............................................................................. 15
6. Use of
digital images for workshops............................................................................ 15
III. Prospects
for the future 16
A. Need
for custom software 16
B. Intensification
of internet use 16
IV. References 16
Table 1: Participants of the Cell 2&3 2000
Workshop held in Palma (Spain)
|
N° |
First name |
Last name |
Country |
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1 |
Richard |
Ayers |
UK |
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2 |
Manuela |
Cunha |
Portugal |
|
3 |
Peer |
Doering-Arjes |
Germany |
|
4 |
Gianfranco |
Giannetti |
Italy |
|
5 |
Toni |
Lombarte |
Spain |
|
6 |
Beatriz |
Morales-Nin |
Spain |
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7 |
Ana |
Moreno |
Portugal |
|
8 |
Andrew |
Newton |
UK |
|
9 |
Conor |
Nolan |
Ireland |
|
10 |
Sandra |
Ramos |
Portugal |
|
11 |
Filipa |
Ribeiro |
Portugal |
|
12 |
Hervé |
Troadec |
France |
The use of digital images for
age estimations of calcified structures can provide many benefits. Their ease of circulation and exchange
should facilitate dialogue at national and international levels on methodology
and interpretation protocols (see glossary of EFAN report 3/98).
The methods and technologies
used in the capture and processing of digital images is a dynamic area that
requires researchers to exchange information regularly. Hence, guidelines
provided below are frequently supposed being updated.
As a first step in the
interpretation of calcified micro and macro structures, used in the
determination of age, a detailed analysis of each structure is required.
Analyses should identify and describe basic structures and their associated
problems and incorporate these in the development of general, standardised
interpretation procedures.
Resulting protocols should be
objective and comparable, recognising intra and inter specific structural
variability in their construction and incorporating recognised terminology in
the formulation of instructions.
Such objectivity will assist
in the resolution of subsequent, subjective interpretation of the image (e.g.
subjectivity due to species life histories, geographical areas of occurrence)
and the associated age estimation of the calcified structure.
EFAN Cell 2 (Information
Processing), a collaboration of software developers and users of digital image
processing software, developed simple protocols for the exchange of interpreted
digital images as a result of a workshop held in the University of Porto
(Portugal, 1998; EFAN Report 3-98). These protocols were used and adapted in
a subsequent workshop on whiting otoliths (Hirtshals, Denmark) where a
reference collection of annotated images was created (Newton, 1998). These
protocols are in a continuous state of update and development and depend on
continued communication between users and software developers for their
successful application (EFAN Report 1/2000, Iraklion, 1999).
·
The establishment of a digital image reference database of calcified
structures (e.g. otoliths, statoliths, scales, spines etc.) of species aged
with computer assisted age estimation tools (semi-automatic or automatic). Such
a database should preferably be web based for maximum accessibility and include
control, agreed and/or validated reference collections (e.g. EFAN Cell 2 “Digital Image Reference
DataBase of Interpreted Calcified Structures”),
·
The establishment of digital image exchange programmes using
standardised protocols,
·
The organisation of ad hoc
workshops to resolve interpretation problems,
·
The initiation, where possible, of dialogue between the users and
developers of image analysis software.
The choice of a specific software package must be
guided by the kind of use that is required (e.g. creation of the image set,
interpretation of images, automatic post-processing of the results) and by
the tools that are required to produce
a correct interpretation (e.g. measurements, back-calculation, focusing).
Software available on the market can be divided into three types :
1.
graphics packages or
photo retouching packages providing tools enabling basic image and graphic
overlay manipulation (e.g. Paintshop-Pro, PhotoShop). They allow the marking of basic structure
information required for calcified structure interpretation. Digitisation is
generally limited to TWAIN drivers that are not sufficiently flexible in most
cases require the use of more specialist imaging packages.
2.
scientific imaging
packages provide the features described in (1) along with sophisticated digitising
capabilities and measurement tools. Some packages provide functions more or
less adapted to age estimation on calcified structures (e.g. Image-Pro, NIH,
Optimas, Visilog).
3.
specialised imaging
software can provide in addition to all the features described in (1) and (2)
more specific functions like real-time back-calculation, ring location, curved
profile acquisition, mosaic building (e.g. OTO, Bony-Parts, TNPC/Visilog). They
are also able to manage basic structure co-ordinates, which can be of a great
help for post-processing of large amounts of readings.
The digital image of a calcified structure is only a
representation of the ‘operators’ preferred
view for interpretation. The
‘operator’ may be a group of experts or a single technician. Associated with
each reference collection, files should be provided detailing the source of the
images and the method used to capture them.
As a collection evolves, it is important that the images within that
collection remain comparable regarding acquisition conditions.
Sensor resolution is constantly increasing but digital
images are still not of a quality comparable to that observed by the human eye
through a microscope. The specification of the otolith collection should
attempt to provide images with the best resolution and the best dynamic range.
Cameras providing images in excess of
1Mb are becoming more widely available and must be preferred to those of lower
resolution. The choice of colour or black and white images should be made after
discussion with expert readers who can give guidance on their use of colour
gradients when making interpretations.
When an age reader is working with an original sample
it is possible to alter all the viewing parameters e.g. lighting, orientation,
magnification or focus, using digital images restricts the parameters that can
be altered by each reader. This effectively restricts the reader to choices
made by whoever digitised the sample.
One of these limitations is that digitising only
provides images in one focal plane. The choice of focal plane can vary
according to the operator and can be considered as subjective. Today there is
no solution available to this problem but ideally a sequence of images could be
acquired while varying the focus i.e. in different focal planes. If
measurements are required, a microscope with a motorised Z-axis will be
necessary in order to precisely interpret this third dimension. This will produce
a huge image file and its ease of manipulation will rely heavily on the memory
(RAM) available on the computer. Additionally, it will require some programming
and tests prior to validation and approval.
An image may be a single captured image showing the
whole structure or a mosaic of captured images (elements) joined to form the
whole structure. When creating a mosaic
image it is important that as many of the viewing parameters remain the same
for each element of the mosaic. Mosaics
can be built by manually overlaying each element (e.g. with a graphics or photo
retouching package) or by using automatic mosaic builders, which attempt to
find common areas. When using automatic
mosaic building systems the stability of the viewing parameters is more
important than that when building mosaics manually. Altering the viewing
parameters can reduce the likelihood of an automatic system finding a
correlation between elements.
Digitisation should be made in a format that does not
result in degradation of image quality.
A lossless image format is preferred e.g. TIFF LZW and users should be
aware of the manner in which their software manages file compression.
With increasing use of digital images the ownership of
an image may become an issue. For each
collection of images, ownership should be detailed and their allowed use
specified. Digital watermarking of images is a way of indelibly stamping
ownership into an image without materially affecting it.
When collecting images for a reference collection the
previous comments regarding operator preference should be given consideration
(part II-A and II-B).
The image collection will be
composed of calibrated digital images with a resolution that still enables the
reader to estimate the age. A graphic interpretation will be associated with
each image in order to describe the location of each basic structure identified
by the reader as being required for its age estimation. Rejected information
produced by the interpretation process (e.g. false annuli) will be also
included in the graphic information.
Large numbers of images can become a problem to
manage. To aid the manager or co-ordinator an agreed file-naming convention
should be adopted as one of the first steps in building an image
collection. The convention should take
into account the platforms across which the images may be used as some systems
may not support extended filenames.
If no measurements or back-calculations are required
from the image collection then Paintshop-Pro (version 5 and later) can be used
as a tool for producing annotated images.
Otherwise the selection of software will be governed by the tools
required (see II-A), and similar procedures as described for Paintshop-Pro can
be applied.
The PaintShop-Pro file format (version
5) ™ (JASC Corporation, http://www.jasc.com) will be used as
the file format with additional layers containing symbols and/or text
annotation regarding the interpretation of the image.
The layer identified as ‘Background’
contains the image of the calcified structure. When there is a need to merge
layers from different files, a square reference point will be marked in an area
away from the structure (Figure 1). This reference point must be duplicated in
each new layer created by readers. The reference point allows accurate
overlaying of marks from different readers into 1 image file for comparison.

Figure 1: Reference point in the
'Background' layer.
Layer identified as "Nucleus", identifies the
position of the nucleus with either a dot or a ring.
Layer identified as "Rings" contains the
agreed checks or rings that the age reader should be attempting to identify.
The rings are be identified with dots that contrast with the sample colours.
Layer identified as "Info" highlights other
features within the image that the reader feels would aid other readers when
interpreting the visible structures e.g. false annuli. These identified features should be backed
up with remarks in the text layer.
Layer identified as "Text" contains remarks
relating to features highlighted in the info layer and comments relating to the
image and its interpretation.
Co-ordinators
should consider the facility to use different colour marks for the parameters
they wish to study (Figure 2) e.g. For a between reader analysis a different
colour would be used for each reader. Using different colours will also
facilitate the post-processing of exchange exercises.
Figure 2: Schematic representation
of a calcified structure image
annotated with graphic layers.

In addition to the image files,
there will be a data file for each image set. This file contains information
about the sample, how it was prepared and information on the equipment used to
capture the image. The data file will be CSV format with 1 line per image file.
Data Required :
1.
Submitting
institute
2.
Species:
Latin name
3.
NODC
code
4.
Institute
assigned identifier -- Allows the original sample to be re processed if
necessary.
5.
Type
of hard part (Otolith, Scale, Statolith, Spine, Vertebra, Tooth)
6.
Length
of individual (mm)
7.
Sex
of individual (M,F,U)
8.
Maturity
stage
9.
Estimated
age
10. Known age
11. Age units (Years, Days,
Seasons)
12. Date of capture (DD/MM/YY)
13. Position of capture
14. Image presented by (Contact
person in institute)
15. Preparation method of the
sample
16. Lighting method (Reflected,
Transmitted, Polarised, Filtered)
17. Camera type
18. Frame grabber type
19. Image resolution at capture
20. Magnification (pixel size or
calibration for measurements)
21. Pre-processing completed before
submission
22. Filename -- note possible
problems with long filename support on some platforms
23. File size -- Kb
Digital
control collections allow a greater flexibility for quality assurance (QA)
procedures as they enable the control of a number of parameters that can affect
an age estimate (e.g. lighting, sample degradation). The problem of sample degradation over time, which reduces
precision, is solved with the use of a digital source. A digital file will remain static for as
long as its storage media is viable. The image file would remain in a read-only
state on a master device with copies being made each time the image is needed.
By providing annotations in addition to age when interpreting a control
collection the reader can give the QA manager a way to investigate the source
of any detected imprecision.
The image format used for control collections will
need, as a minimum, the ’Background’ layer (i.e. the basic image of the
structure) and the ‘Rings’ layers.
There must be also in place measures to keep track of information on the
reader and the date of the estimation (e.g. this may be in the form of agreed
filenames).
A larger control collection would reduce the problem
of ‘reader memory’ memory’ (i.e. recognition of individual otoliths and the
recollection of prior age estimates) but requires larger manpower input at the beginning of the process to capture
images and provide a first estimate for each reader.
Although the viewing parameters were fixed when the
image was captured it is possible for an age reader to adjust the image by the
use of filters (e.g. brightness, contrast, etc). Due to the effect that digital filters can have on bias
in the estimations, the use of such filters should be considered as part of the
reading protocol.
When a reader is allocated a sample of digital images
to read they will be given copies of the master image containing only the
‘Background’ layer. In the process of making their estimation, they will create
a new ‘Rings’ layer duplicating the reference square. They will then mark their interpretation of the structure onto
the new layer and save the file. Once
they have completed all the samples required the marked files will be returned
to the co-ordinator with their age estimations. If a problem in precision arises the co-ordinator can discuss the
problem with the reader using their interpretation and historically marked
images.
Because the images within an agreed collection contain
the results of multiple interpretations of the structures they become useful to
new readers to see a wider range of interpretations without the need for all
the experienced readers to be present.
The image format for this type of collection should
use all the layer types described above (i.e. IIC1 et seq.). The ‘Rings’ layer should contain the agreed
interpretation with additional ‘Rings’ layers containing the interpretation of
each of the agreeing readers.
Validated collections are an extremely valuable
resource. Digital versions of validated collections would allow much wider use
of these collections without the inherent risks involved in transporting
original samples.
The image format for validated collections should
include all the described layer types with text layer including information on
or references to the method of validation.
One of the major problems with standard sample
exchanges is the time-lag as the samples are passed to each reader. In order to
increase the speed of the exchange, database and software access might be
proposed in different ways:
·
By sending the
database on CD-Rom (650Mb) or DVD-Rom (4.7 Gb),
·
By downloading the
database from an ftp site.
Co-ordinators should survey the participating
institutes to identify a suitable level of hardware compatibility (e.g. the media type to be used for distribution,
the operating platform to be used).
Digitisation is the first stage in all uses of images
and should form part of the introductory session of the workshop. The protocols used by individual institutes
should be available for discussion and the co-ordinator should consider whether
it is appropriate to digitise a sample of the structures during the first part
of the workshop.
The images that will be used in the workshop should,
where possible, be digitised to a previously agreed standard.
The co-ordinator should consider the use of networked
facilities for holding the source images, in a read-only form, and the result
images of the workshop sessions. These
files must be included in routine secure backups.
At some point during the workshop it will become
necessary to discuss images and results in a plenary session and facilities
such as a large screen projector connected to a PC should be available.
If information such as length, region of capture,
season of capture are considered important factors in the estimation of age, it
should be made available in an accessible form. It may be appropriate to include the information as part of each
image.
Using collection management software it would be
possible to allocate samples to be read by a selected reader, pass those images
to the reader, collect the resulting age estimations and compute agreement
levels for constructing an agreed collection. The management software would
assist the post-processing of the interpretation results (e.g. compare ring
locations automatically, track and report changes in precision and provide
additional analyses).
A more intensive use of
internet would provide a solution for many current problems :
·
A virtual workshop
would ensure a quick and cheap collection of the data,
·
Standard web browsers
may be the solution to the hardware compatibility problems,
·
Remote access to
existing software via Web conferencing software (e.g. NetMeeting, Microsoft ä) or to a specific Web-designed software would
ensure interpretative tool
harmonisation of tools and protocols and eventually more in a more efficient
post-processing of the data.
EFAN,
1998. Report of the EFAN Cell 2 Workshop on the " Establishment of a digital image reference database” held at the
University of Porto, 28-29 September 1998, EFAN Report 3/98, Editor: H.
Troadec, 42 p.
EFAN,
1999. Report of the EFAN Cell 2 Workshop on the Contrast enhancement and
pre-processing of calcified structure images” held at the Candia Maris
Hotel
Heraklion, Greece, 4-5 October 1999, EFAN Report 1/2000, Editor: H.
Troadec, available at :http://www.efan.no/rep2000/C2Rep99.htm.
Newton, A. W., 1998. Report of the ICES/FAIR Otolith
Ageing of North Sea Whiting Working Group at Hirtshals, Denmark October 1998.
Cell Co-ordinator Beatriz Morales-Nin (Spain)
The Cell ordinary meeting was held
on October 5th at the University of the Balearic Islands. The
participants reviewed the tasks and deliverables for the Cell and agreed on the
work to be carried out at the meeting.
The first issue in the agenda was
to review the database on validated age studies for selected species, which has
been updated and which constitutes one of the deliverables of the Cell. The
database contains now 84 references with validation information, selected form
several hundred papers reviewed by the Cell members.
The database shows that the
validation studies are based evenly on: analysis of the marginal structure,
fishes of known age, and corroborative studies with length frequency analysis
(Fig.1). Marking experiments are less frequent Other method used is otolith
microstructure analysis.

The second item in the
agenda was the presentation of a study on different calcified structures of
fish of known and unknown age by Jari Ratainemi. This study has been published
has a Finnish guidebook with abundant graphic material.
Tagging experiments, with
external tagging plus marking of calcified tissues by tetracycline, were
submitted by Paulino Lucio. These experiments are part of European Projects,
and deal on horse mackerel in captivity
and hake and anglerfish in the wild.
Finally, the Cell members
reviewed the Cell guidelines for validation studies, a draft of which was
previously distributed. The edited text has been submitted as an EFAN Report
and is included in the web page.
5. Cell 5 WS Report
The
cell received an update of research projects by cell 5 members for the data
base. However, despite considerable effort in setting up the questionnaire and
advertising it at conferences the response and use of this database has
generally been poor, especially for researchers who are not members of EFAN. The propsal is called “Integrated approach to
the Biological basis of Age estimation in Commercially important fish Species”
(IBACS).
The
need for an objective approach to the interpretation of micro- and
macro-structures was identified as the most urgent requirement for future
research at the joint meeting with cell 4 in 1999. A sub-group of cell 5 has
since put together a proposal for the October 2000 Vth Framework
round.
6. EFAN Award 2000
This year the EFAN Award was
given to Magnus Appelberg from Institute of Freshwater Research, Sweden. Below is
the argument for giving the 2000 EFAN award to Magnus Appelberg:
|
Magnus
Appelberg : He
has developed the aims of EFAN in a model way, by getting all the persons
involved in fish age determination in Sweden (freshwater, coastal and marine)
to work together to implement Quality Assurance for their work. |
|
6. Exchange and Mobility Costs
Below
you will find the cost of the previous meetings and the estimated cost of the
Mallorca meeting in October 2000.
|
Plenary
Meeting/WS |
Cost in
NOK |
Approx. cost
in EUR |
|
Past
Meeting/WS |
|
|
|
Arendal January 1997 |
304.905 |
37.184 |
|
Brest May 1997 |
451.126 |
55.015 |
|
Cell 5 WS, Bergen June 1998 |
47.628 |
5.808 |
|
Porto, Portugal October 1998 |
329.289 |
40.157 |
|
Cell 1 WS, Ireland June 1999 |
|
2.500 |
|
Iraklion, Greece October1999 |
|
96.000 |
|
Palma de Mallorca, Spain March 2000 |
|
7.000 |
|
Palma de Mallorca, Spain October 2000 |
|
42.000 |
|
Total sum |
|
285.664 |
*)
Exchange rate: 1 ECU = 8.20 NOK
7. Some general information
|
The 3rd International Symposium on Fish Otolith Research and Application will be
held in Cairns, Australia in year 2003 Convener: John M. Kalish Fisheries and Forestry
Sciences Division Bureau of Rural Sciences PO Box E11 KINGSTON
ACT 2604 Australia Phone: +61-2-6272-4045 Fax: + 61-2-6272-4014 Email: John.Kalish@brs.gov.au |
8. List of EFAN Reports
EFAN
Report 1-97: . Beatriz Morales Nin
(Spain). REVIEW ON THE EUROPEAN HAKE
AGE DETERMINATION AND VALIDATION PROBLEMS
EFAN
Report 2-97: Eugenia Lefkaditou
(Greece). BRIEF NOTES ON AGEING PROCEDURES USED FOR STATOLITHS OF SQUIDS
COLLECTED FROM THE AEGEAN SEA (GREECE)
EFAN
Report 1-98: The present status of otolith research and applications. Proceedings
of a workshop, held at ORSTOM, Brest, France 27-29 May, 1997
EFAN
Report 2-98: Otolith preparation and analysis. Proceedings of a workshop held at
the University of Bergen, Norway, June 18-20, 1998
EFAN
Report 3-98: Establishment of a digital image
reference database. Proceedings of a workshop held at the University
of Porto, Portugal, 28-29 September, 1998
EFAN
Report 4-98: by Mª Teresa García
Santamaría "Anchovy (Engraulis encrasicolus) otolith exchange (1997 - 1998)"
EFAN
Report 1-99: by Andrew W. Newton
"NORTH SEA COD OTOLITH EXCHANGE SCHEME 1997-1998"
EFAN
Report 2-99: Computer assisted age reading. Proceedings of a workshop held at
IFREMER, Brest, France, 26-28 May, 1997
EFAN
Report 3-99: by Beatriz
Morales-Nin "BLACK SCABBARD FISH (Aphanopus carbo) OTOLITH EXCHANGE
(1998-1999)"
EFAN
Report 4-99: by Ma Teresa
García Santamatía "Information on
age validation studies of sardine (Sardina
pilchardus Walbaum, 1792) and anchovy (Engraulis
encrasicolus Linnaeus, 1758)"
EFAN Report 5-99: by Mc Curdy William J, Cornelius
Hammer and Magnus Appelberg "EFAN in the Context of Quality
Assurance and Quality Control Working Document for the EFAN Annual Meeting
1999, Crete "
EFAN Report 1-2000: Report of the EFAN Cell 2 Workshop
on "Contrast enhancement and pre-processing of calcified structure
images", 4-5 October 1999, held at
the Institute of Marine Biology of Crete.
By H. Troadec. Available
at the EFAN Homepage.
EFAN Report 2-2000: 3rd International
Ageing Workshop on European Anglerfish.
IPIMAR, Lisboa, 8-12 March 1999. .
Available at the EFAN Homepage.
EFAN Report 3-2000: Guidelines and
Tools for Age Reading Comparisons
EFAN
Report 4-2000: Guidelines for Validation Studies
EFAN Report
5-2000: Guidelines for the Quality Assurance of Fish Age Determination
EFAN Report
6-2000: Carmen Piñeiro Alvarez "Report on workshop on hake otolith age reading, Vigo, 23-27
June, 1997"
EFAN Report
7-2000: Anon. "Report on the 2nd Intenational workshop on hake
otolith age reading, Vigo, 15-19 February, 1999". Available at the EFAN
Homepage.
EFAN Report
8-2000: Use of digital tools for exchanging annotated images of calcified
structures. Proceedings an EFAN Cell
2 & 3 workshop held at Universitat de les Illes Balears, Palma de Mallorca,
Spain, 4 – 5 October 2000.
EFAN Report 9-2000: Centre for Fish Ageing in Sweden. Quality assurance by Swedish fish ageing laboratories – a
progress report. (Eds.: M. Appelberg,
J. Modin and H. Svedäng).
Hammer. C, W. McCurdy, J. Modin, E. Moksness, B.
Morales-Nin, H. Troadec and P. Wright
2000. EFAN (European fish ageing
network): A cooperative effort to exchange experience and protocols between
European fish institutes. 3rd
World Fisheries Congress, Bejing, China, October 2000.
McCurdy, W.J. and E.
Moksness 1997. The establishment of EFAN - The European
network of fish ageing laboratories.
ICES CM 1997/HH:01 (Poster)
Anon. 1998. EFAN -
The European Fish Ageing Network. Third
European Marine Science and Technology Conference, 23-27 May 1998, Lisbon,
Portugal (Poster)